Index

_

__init__() (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method) (SimpleWalker method) (Validator method)

A

adjusted_length (ScoreMetrics attribute) alternatives (Score attribute)

assigned_tracks (SimpleWalker attribute)

B

bb_tracking.data.constants (module) bb_tracking.data.datastructures (module) bb_tracking.data.datawrapper (module) bb_tracking.data.datawrapper_binary (module) bb_tracking.data.datawrapper_pandas (module) bb_tracking.data.datawrapper_tracks (module) bb_tracking.tracking.scoring (module) bb_tracking.tracking.tracking (module)

bb_tracking.tracking.training (module) bb_tracking.tracking.walker (module) bb_tracking.validation.validation (module) bb_tracking.validation.visualization (module) beeId (Detection attribute) beeId_digits (DataWrapperPandas attribute) bit_array_to_int_v() (in module bb_tracking.tracking.scoring)

C

calc_fragments() (in module bb_tracking.validation.validation) calc_id (Score attribute) calc_median_ids() (in module bb_tracking.tracking.scoring) calc_track_ids() (in module bb_tracking.tracking.scoring) calc_tracks() (SimpleWalker method) cam_false_positives (DataWrapperTruthBinary attribute) cam_ids (DataWrapperBinary attribute) (DataWrapperTracks attribute)

cam_timestamps (DataWrapperBinary attribute) (DataWrapperTracks attribute) (Validator attribute) cam_tracks (DataWrapperTruthBinary attribute) CAMKEY (in module bb_tracking.data.constants) clean_data() (DataWrapperPandas method) (DataWrapperTruthPandas method) code_unknown (DataWrapperTruth attribute) cols (DataWrapperPandas attribute) convert_validated_to_pandas() (in module bb_tracking.validation.validation)

D

data (DataWrapperTracks attribute) (SimpleWalker attribute) DataWrapper (class in bb_tracking.data.datawrapper) DataWrapperBinary (class in bb_tracking.data.datawrapper_binary) DataWrapperPandas (class in bb_tracking.data.datawrapper_pandas) DataWrapperTracks (class in bb_tracking.data.datawrapper_tracks) DataWrapperTruth (class in bb_tracking.data.datawrapper) DataWrapperTruthBinary (class in bb_tracking.data.datawrapper_binary) DataWrapperTruthPandas (class in bb_tracking.data.datawrapper_pandas) DataWrapperTruthTracks (class in bb_tracking.data.datawrapper_tracks) deletes (ScoreMetrics attribute)

Detection (class in bb_tracking.data.datastructures) detections (DataWrapperPandas attribute) detections_dict (DataWrapperBinary attribute) (DataWrapperPandas attribute) DETKEY (in module bb_tracking.data.constants) distance_orientations() (in module bb_tracking.tracking.scoring) distance_orientations_v() (in module bb_tracking.tracking.scoring) distance_positions_v() (in module bb_tracking.tracking.scoring) duplicate_cols (DataWrapperTruthPandas attribute) duplicates_radius (DataWrapperPandas attribute)

F

false_positives (DataWrapperTruthBinary attribute) fp_id (DataWrapperTruth attribute) FPKEY (in module bb_tracking.data.constants) frame_detections (DataWrapperBinary attribute) frame_diff (SimpleWalker attribute)

frame_track_end (DataWrapperTracks attribute) frame_track_start (DataWrapperTracks attribute) frame_trees (DataWrapperBinary attribute) (DataWrapperTracks attribute) FRAMEIDXKEY (in module bb_tracking.data.constants)

G

gap_left (ScoreMetrics attribute) gap_matches (ScoreMetrics attribute) gap_right (ScoreMetrics attribute) generate_learning_data() (in module bb_tracking.tracking.training) get_all_detection_ids() (DataWrapperTruth method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method) get_camids() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) get_detection() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) get_detections() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) get_frame_objects() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method)

get_frame_objects_starting() (DataWrapperTracks method) get_neighbors() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) get_timestamps() (DataWrapper method) (DataWrapperBinary method) (DataWrapperPandas method) (DataWrapperTracks method) get_track() (DataWrapperTracks method) get_tracks() (DataWrapperTracks method) get_truth_track() (DataWrapperTruth method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method) get_truth_tracks() (DataWrapperTruth method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method) get_truthid() (DataWrapperTruth method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method) get_truthids() (DataWrapperTruth method) (DataWrapperTruthBinary method) (DataWrapperTruthPandas method) (DataWrapperTruthTracks method)

I

id (Detection attribute) (Track attribute) id_matches (ScoreMetrics attribute) id_mismatches (ScoreMetrics attribute)

ids (Track attribute) inserts (ScoreMetrics attribute)

M

make_detection_score_fun() (in module bb_tracking.tracking.tracking) make_track_score_fun() (in module bb_tracking.tracking.tracking) max_weight (SimpleWalker attribute) mean_duplicates_merge_columns (DataWrapperPandas attribute)

merge_cols (DataWrapperTruthPandas attribute) meta (Detection attribute) (Track attribute) metrics (Score attribute) min_track_start_length (SimpleWalker attribute)

O

orientation (Detection attribute)

P

plot_fragments() (in module bb_tracking.validation.visualization) positives (DataWrapperTruthBinary attribute)

prune_weight (SimpleWalker attribute)

R

radius (SimpleWalker attribute)

remove_false_positives() (Validator method)

S

sanity_check() (Validator method) Score (class in bb_tracking.data.datastructures) score_fun (SimpleWalker attribute) score_id_sim() (in module bb_tracking.tracking.scoring) score_id_sim_orientation() (in module bb_tracking.tracking.scoring) score_id_sim_orientation_v() (in module bb_tracking.tracking.scoring) score_id_sim_rotating() (in module bb_tracking.tracking.scoring) score_id_sim_rotating_v() (in module bb_tracking.tracking.scoring)

score_id_sim_tracks_median_v() (in module bb_tracking.tracking.scoring) score_id_sim_v() (in module bb_tracking.tracking.scoring) score_ids_and_orientation() (in module bb_tracking.tracking.scoring) score_ids_best_fit() (in module bb_tracking.tracking.scoring) score_ids_best_fit_rotating() (in module bb_tracking.tracking.scoring) score_track() (Validator method) ScoreMetrics (class in bb_tracking.data.datastructures) SimpleWalker (class in bb_tracking.tracking.walker)

T

timestamp (Detection attribute) timestamps (DataWrapperBinary attribute) (DataWrapperTracks attribute) (Track attribute) (Validator attribute) Track (class in bb_tracking.data.datastructures) track_id (Score attribute) track_id_count (SimpleWalker attribute) track_length (ScoreMetrics attribute) track_prefix (SimpleWalker attribute) track_statistics() (in module bb_tracking.validation.validation)

tracks (DataWrapperTracks attribute) (DataWrapperTruthBinary attribute) train_and_evaluate() (in module bb_tracking.tracking.training) train_bin_clf() (in module bb_tracking.tracking.training) truth (Validator attribute) truth_id (Score attribute) truth_track_length (ScoreMetrics attribute) TRUTHKEY (in module bb_tracking.data.constants)

V

validate() (Validator method) validate_plot() (in module bb_tracking.validation.visualization) validation_score_fun_all() (in module bb_tracking.validation.validation)

Validator (class in bb_tracking.validation.validation) value (Score attribute)

X

x (Detection attribute)

Y

y (Detection attribute)